When X-R enters the conference room to propose a negotiation plan, there is a blonde female Ranger behind him whose ponytail disappears. In the next cut, her ponytail is back again.
Several scenes where the characters are meant to blink, they stand several seconds with their eyes closed.
The first sound of the Pixar logo is strangely absent.
This film uses the 1990 Walt Disney Pictures castle logo instead of the Pixar castle logo.
The FBI warning screen is strangely absent when the toys put in the VHS tape of the film.