A couple of times, Hannibal Smith calls Tia Carrera's character by the name Annie, but then in other scenes, he calls her Tia.
Although the General's plane being used is a Lear Jet 24, when the scene switches to a cockpit view the word "Beechcraft" is seen on one of the instruments and there are propeller pitch controls which a jet aircraft does not have. Most likely a reused cockpit footage of the Beechcraft C-18S used earlier.
Every time Murdoch throws a grenade out the hut's window, it can be seen that the "outside" is really indoors as the structure of a skylight can be seen.
After Murdoch breaks out of the VA hospital, B.A. refers to Colonel Morrison as "this Morrison guy", despite the fact that Morrison would have been very well known to B.A. as his senior officer.