The main villain in this episode is named Farrokh Bulsara. This is the birth name of Freddie Mercury, the lead singer of Queen.
During her interview with Emmett, Anna states that she speaks binary, and says "00011010", which is her age, twenty-six.
In Morimoto's office, an Ultraman figure can be spotted.
When Chuck enters Morimoto's office, the song playing is "Tom Sawyer" by Rush.
Atari is mentioned as the developer of the retro "Missile Command" game. And Chuck (and team) visit Morimoto's office at Atari HQ. However, the Atari that existed in 2008 was not strongly related to the famed company of the 70s & 80s, that would have made "Missile Command". Nor would a designer from the 70s/80s still be with the company. The Pong (1972) developer, formed in 1972, was sold or reformatted numerous times between 1976 and 2002, when it was sold to French game developer Infogrames Entertainment SA. The newly branded Atari SA bought the rights to the Atari back-catalog for $5 million, but continued developing games with it's own team of designers and developers.